红杆菌科
（重定向自Rhodobacteraceae）
红杆菌科
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科学分类 
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| 域： | 细菌域 Bacteria |
| 门： | 假單胞菌門 Pseudomonadota |
| 纲： | α-变形菌纲 Alphaproteobacteria |
| 目： | 红杆菌目 Rhodobacterales |
| 科： | 红杆菌科 Rhodobacteraceae Garrity et al., 2006 |
| 模式属 | |
| 红杆菌属 Rhodobacter Imhoff et al., 1984
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红杆菌科（学名：Rhodobacteraceae）為红杆菌目的一科细菌。此科的模式属为红杆菌属(Rhodobacter)。
现为Paracoccaceae Liang et al. 2022的异名。
下属分类
[编辑]本科包括以下属：[1]
- Acidimangrovimonas Ren et al. 2019
- Actibacterium Lucena et al. 2012
- Aestuariibius Park et al. 2018
- Aestuariicoccus Feng et al. 2018
- Aestuariihabitans Yoon et al. 2014
- Aestuarium Yu et al. 2019
- Agaricicola Chu et al. 2010
- Albibacillus Hördt et al. 2020
- Albidovulum Albuquerque et al. 2003
- Albimonas Lim et al. 2008
- Albirhodobacter Nupur et al. 2015
- Aliishimia Kim et al. 2019
- Alkalilacustris Zhang et al. 2019
- Allgaiera Hördt et al. 2020
- Allosediminivita Hördt et al. 2020
- 下水道球菌属 Amaricoccus Maszenan et al. 1997
- Amylibacter Teramoto & Nishijima 2014
- 南极微菌属 Antarcticimicrobium Zhang et al. 2020
- Antarctobacter Labrenz et al. 1998
- Aquicoccus Feng et al. 2018
- Aquimixticola Park et al. 2015
- Arenibacillus Kim et al. 2019
- Arenibacterium Baek et al. 2020
- Ascidiaceihabitans Kim et al. 2014
- Bieblia Hördt et al. 2020，异名
- Boseongicola Park et al. 2014
- Brevirhabdus Wu et al. 2015
- 伴真虾菌属 Carideicomes Wang et al. 2020
- Catellibacterium Tanaka et al. 2004，异名
- 速生杆菌属 Celeribacter Ivanova et al. 2010
- Cereibacter Suresh et al. 2015
- Chachezhania Yuan et al. 2020
- Citreicella Sorokin et al. 2006，异名
- Citreimonas Choi & Cho 2006
- Cognatishimia Wirth & Whitman 2018
- Cognatiyoonia Wirth & Whitman 2018
- Confluentimicrobium Park et al. 2015，异名
- Cribrihabitans Chen et al. 2014
- Cypionkella Hördt et al. 2020
- 污物球菌属 Defluviimonas Foesel et al. 2013
- Dinoroseobacter Biebl et al. 2005
- Donghicola Yoon et al. 2007
- Epibacterium Penesyan et al. 2013，异名
- Falsirhodobacter Subhash et al. 2013
- Flavimaricola Wirth & Whitman 2018
- 河小杆菌属 Fluviibacterium Sun et al. 2020
- Frigidibacter Li & Zhou 2015
- Fuscovulum Suresh et al. 2020
- Fuscovulum blasticum (Eckersley and Dow 1981) Suresh et al. 2020
- Fuscovulum ytuae Zhang et al. 2024[2]
- Gaetbulicola Yoon et al. 2010，异名
- 芽殖杆菌属 Gemmobacter Rothe et al. 1988
- Haematobacter Helsel et al. 2007
- Hahyoungchilella Kim & Lee 2020
- Halocynthiibacter Kim et al. 2014
- Halodurantibacterium Lv et al. 2015
- 小盐卵菌属 Halovulum Sun et al. 2015
- Hasllibacter Kim et al. 2012
- Histidinibacterium Wang et al. 2019
- 怀恕菌属 Huaishuia Wang et al. 2012，为Celeribacter Ivanova et al. 2010的异名，以徐怀恕教授的名字命名
- Hwanghaeicola Kim et al. 2010
- Jannaschia Wagner-Döbler et al. 2003
- Jhaorihella Rekha et al. 2011
- Kandeliimicrobium Wang et al. 2018
- Kangsaoukella Lee et al. 2020
- Lacimonas Zhong et al. 2015
- Leisingera Schaefer et al. 2002
- Lentibacter Li et al. 2012
- Limibaculum Shin et al. 2017
- Limimaricola Wirth & Whitman 2018
- Limimaricola aestuariicola (Park et al. 2015) Wirth and Whitman 2018
- Limimaricola cinnabarinus (Tsubouchi et al. 2013) Wirth and Whitman 2018
- Limimaricola hongkongensis (Lau et al. 2004) Wirth and Whitman 2018
- Limimaricola litoreus Shao et al. 2023[3]
- Limimaricola pyoseonensis (Moon et al. 2010) Wirth and Whitman 2018
- Limimaricola soesokkakensis (Park et al. 2014) Wirth and Whitman 2018
- Limimaricola variabilis (Park et al. 2014) Wirth and Whitman 2018
- Litoreibacter Romanenko et al. 2011
- Litorimicrobium Jin et al. 2011
- Litorimicrobium taeanense Jin et al. 2011
- Litorisediminicola Yoon et al. 2013
- Litorisediminivivens Park et al. 2016
- Litorivita Hetharua et al. 2018
- Loktanella Van Trappen et al. 2004
- Luteovulum Suresh et al. 2020，为Cereibacter Suresh et al. 2015的异名
- Lutimaribacter Yoon et al. 2009
- Maliponia Jung et al. 2016
- 海微生态室菌属 Mameliella Zheng et al. 2010
- Mangrovicoccus Yu et al. 2018
- Maribius Choi et al. 2007
- Marimonas Thongphrom et al. 2017
- 海洋杆状菌属 Marinibacterium Li et al. 2015
- Marinovum Martens et al. 2006
- 海棍状菌属 Maritimibacter Lee et al. 2007
- Marivita Hwang et al. 2009
- 隐藻海生菌 Marivita cryptomonadis Hwang et al., 2009
- Marivita geojedonensis Yoon et al., 2013
- Marivita hallyeonensis Yoon et al., 2012
- Marivita lacus Zhong et al., 2015
- Marivita litorea Hwang et al., 2009
- 海居菌属 Marivivens Park et al. 2016
- Meinhardsimonia Hördt et al. 2020
- Meridianimarinicoccus Ren et al. 2019
- Methylarcula Doronina et al. 2000
- Monaibacterium Chernikova et al. 2017
- Nautella Vandecandelaere et al. 2009，为Phaeobacter Martens et al. 2006的异名
- Neptunicoccus Zhang et al. 2018
- Nereida Pujalte et al. 2005
- Nioella Rajasabapathy et al. 2015
- Oceanibium Chang et al. 2019
- Oceanibulbus Wagner-Döbler et al. 2004，异名
- Oceanicella Albuquerque et al. 2012
- 海栖菌属 Oceanicola Cho & Giovannoni 2004
- 大洋丸菌属 Oceaniglobus Li et al. 2017
- 十八杆菌属 Octadecabacter Gosink et al. 1998
- Pacificibacter Romanenko et al. 2011
- Pacificitalea Hördt et al. 2020
- Paenimaribius Park et al. 2019
- Paenirhodobacter Wang et al. 2014
- Palleronia Martínez-Checa et al. 2005Name
- Palleronia abyssalis Albuquerque et al. 2015
- Palleronia aestuarii (Kim et al. 2010) Barnier et al. 2022
- Palleronia caenipelagi (Park et al. 2019) Zhang et al. 2023[4]
- Palleronia marisminoris Martínez-Checa et al. 2005
- Palleronia pelagia (Choi et al. 2007) Barnier et al. 2023
- Palleronia pelagia (Choi et al. 2007) Barnier et al. 2020
- Palleronia pontilimi (Lee 2018) Barnier et al. 2022
- Palleronia rufa Barnier et al. 2022
- Palleronia salina (Choi et al. 2007) Barnier et al. 2022
- Palleronia sediminis Sun et al. 2021
- Palleronia soli Kim et al. 2015
- 副球菌属 Paracoccus Davis 1969
- Paradonghicola Lee et al. 2019
- Paraphaeobacter Cai et al. 2017
- 副红细菌属 Pararhodobacter Foesel et al. 2013
- Parasedimentitalea Ding et al. 2020
- Paroceanicella corrig. Liu et al. 2020
- Pelagibaca Cho & Giovannoni 2006
- Pelagicola Kim et al. 2008
- Pelagimonas Hahnke et al. 2013
- 外海棒菌属 Pelagivirga Ji et al. 2018
- 大洋卵菌属 Pelagovum Ren et al. 2020
- Phaeobacter Martens et al. 2006
- Phaeovulum Suresh et al. 2020
- Phaeovulum veldkampii (Hansen and Imhoff 1985) Suresh et al. 2020
- Phaeovulum vinaykumarii (Srinivas et al. 2007) Suresh et al. 2020
- Phycocomes Zhu et al. 2019
- Planktomarina Giebel et al. 2013
- Planktotalea Hahnke et al. 2012
- Pleomorphobacterium Yin et al. 2013，异名
- Pontibaca Kim et al. 2010
- 海洋球菌属 Ponticoccus Hwang and Cho 2008
- Pontivivens Park et al. 2015
- Poseidonocella Romanenko et al. 2012
- Primorskyibacter Romanenko et al. 2011
- Profundibacter Le Moine Bauer et al. 2019
- Profundibacterium Lai et al. 2013
- Pseudaestuariivita Wirth & Whitman 2018
- Pseudodonghicola Hameed et al. 2014
- Pseudodonghicola flavimaris Huang et al. 2023[7]
- Pseudodonghicola xiamenensis (Tan et al. 2009) Hameed et al. 2014
- Pseudogemmobacter Suman et al. 2019
- Pseudohalocynthiibacter Won et al. 2015
- Pseudomaribius Park et al. 2018
- 假海栖菌属 Pseudooceanicola Lai et al. 2015
- Pseudooctadecabacter Billerbeck et al. 2015
- Pseudopelagicola Kim et al. 2014，为Shimia Choi and Cho 2006的异名
- Pseudophaeobacter Breider et al. 2014
- Pseudoprimorskyibacter Hördt et al. 2020
- Pseudopuniceibacterium Zhang et al. 2019
- Pseudorhodobacter Uchino et al. 2003
- Pseudorhodobacter antarcticus Chen et al., 2013
- Pseudorhodobacter aquaticus Li et al., 2016
- Pseudorhodobacter aquimaris Jung et al., 2012
- Pseudorhodobacter collinsensis Zhang et al., 2016
- Pseudorhodobacter ferrugineus (Rüger & Höfle, 1992) Uchino et al., 2003
- Pseudorhodobacter incheonensis Lee, Kwon, Lee, Cho & Lee, 2005
- Pseudorhodobacter ponti Jung et al., 2017
- Pseudorhodobacter psychrotolerans Lee et al., 2016
- Pseudorhodobacter sinensis Li et al., 2016
- Pseudorhodobacter turbinis Jeong et al. 2021[8]
- Pseudorhodobacter wandonensis Lee et al., 2013
- 假浅粉色环菌属 Pseudoroseicyclus Park et al. 2016
- Pseudoroseicyclus aestuarii Park et al. 2016
- 柽柳假浅粉色环菌 Pseudoroseicyclus tamaricis Gai et al. 2021
- Pseudoroseovarius Sun et al. 2015，为Aliiroseovarius Park et al., 2015的异名
- Pseudoruegeria Yoon et al. 2007
- Pseudoseohaeicola Park et al. 2015
- Pseudothioclava Kim & Lee 2020
- Psychromarinibacter Qiao et al. 2017
- 釜庆大菌属 Pukyongiella Kim et al. 2020
- Puniceibacterium Liu et al. 2014
- Rhodobaca Milford et al. 2001
- 红杆菌属 Rhodobacter Imhoff et al. 1984
- Rhodobaculum Bryantseva et al. 2015
- Rhodalgimonas Nedashkovskaya et al. 2024
- Rhodalgimonas zhirmunskyi Nedashkovskaya et al. 2024[9]，以A.V. Zhirmunsky的名字命名
- Rhodophyticola Jung et al. 2019
- Rhodosalinus Guo et al. 2017
- 小红卵菌属 Rhodovulum Hiraishi & Ueda 1994
- Roseibaca Labrenz et al. 2009
- Roseibacterium Suzuki et al. 2006
- Roseicitreum Yu et al. 2011
- 粉色环菌属 Roseicyclus Rathgeber et al. 2005
- 粉红碱杆菌属 Roseinatronobacter Sorokin et al. 2000
- 碱土粉红碱杆菌 Roseinatronobacter alkalisoli Hu et al. 2024
- Roseinatronobacter bogoriensis (Milford et al. 2001) Huang et al. 2024
- Roseinatronobacter domitianus (Gattoni et al. 2024) Huang et al. 2024
- Roseinatronobacter ekhonensis (Labrenz et al. 2009) Huang et al. 2024
- Roseinatronobacter monicus Boldareva et al. 2009
- Roseinatronobacter thiooxidans Sorokin et al. 2000
- Roseisalinus Labrenz et al. 2005
- Roseivivax Suzuki et al. 1999
- 玫瑰杆菌属 Roseobacter Shiba 1991
- 玫瑰变色菌属 Roseovarius Labrenz et al. 1999
- Rubellimicrobium Denner et al. 2006
- Rubellimicrobium aerolatum Weon et al. 2009
- Rubellimicrobium arenae Han et al. 2023
- Rubellimicrobium mesophilum Dastager et al. 2008
- Rubellimicrobium roseum Cao et al. 2013
- Rubellimicrobium rubrum Jiang et al. 2020[10]
- Rubellimicrobium thermophilum Denner et al. 2006
- Rubribacterium Boldareva et al. 2010
- Rubribacterium polymorphum Boldareva et al. 2010
- Rubricella Yang et al. 2017
- Rubricella aquisinus Yang et al. 2017
- Rubrimonas Suzuki et al. 1999
- 克利夫顿淡红色单胞菌 Rubrimonas cliftonensis Suzuki et al., 1999[11]
- 鲁杰氏菌属 Ruegeria Uchino et al. 1999
- 箭头菌属 Sagittula Gonzalez et al. 1997
- Salinihabitans Yoon et al. 2009
- Salinihabitans flavidus Yoon et al. 2009
- Salinovum Qu et al. 2017
- 盐懒惰菌属 Salipiger Martínez-Cánovas et al. 2004
- Sedimentitalea Breider et al. 2014
- Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014
- Sedimentitalea todarodis Kim et al. 2016
- Sedimentitalea xiamensis Huang et al. 2023[12]
- Sediminimonas Wang et al. 2009
- Seohaeicola Yoon et al. 2009
- Silicibacter Petursdottir & Kristjansson 1999，为Ruegeria Uchino et al. 1999的异名
- Silicimonas Crenn et al. 2016
- Sinirhodobacter Yang et al. 2018，也拼作：Solirhodobacter Chu et al. 2020
- Staleya Labrenz et al. 2000，异名
- 亚硫酸盐杆菌属 Sulfitobacter Sorokin 1996
- 大不里士杆菌属 Tabrizicola Tarhriz et al. 2014
- Tabrizicola algicola Park et al. 2020[13]
- Tabrizicola alkalilacus Phurbu et al. 2019
- Tabrizicola aquatica Tarhriz et al., 2014
- Tabrizicola blastica (Eckersley and Dow 1981) Hördt et al. 2020
- Tabrizicola flagellata (Xian et al. 2020) Ma et al. 2022，也拼作：Tabrizicola flagellatus
- Tabrizicola fusiformis Ko et al. 2018
- Tabrizicola oligotrophica Sheu et al. 2020
- Tabrizicola piscis Han et al. 2020
- Tabrizicola rongguiensis Xu et al. 2022
- Tabrizicola sediminis Liu et al. 2019
- Tabrizicola soli (Hu et al. 2018) Ma et al. 2022[14]，为Xinfangfangia soli Hu et al. 2018
- Tabrizicola thermarum (Khan et al. 2019) Ma et al. 2022[14]
- Tateyamaria Kurahashi & Yokota 2008
- Thalassobacter Macián et al. 2005，为 Jannaschia Wagner-Döbler et al. 2003的异名
- Thalassobius Arahal et al. 2005
- Thalassobius abyssi Nogi et al. 2016
- Thalassobius activus Pujalte et al. 2018
- Thalassobius aestuarii Yi and Chun 2007
- Thalassobius aquaeponti Park et al. 2015
- Thalassobius aquimarinus Kurilenko et al. 2021
- Thalassobius autumnalis Pujalte et al. 2018
- Thalassobius gelatinovorus (Rüger and Höfle 1992 ex Ahrens 1968) Arahal et al. 2006
- Thalassobius litoralis (Iwaki et al. 2013) Hördt et al. 2020
- Thalassobius litorarius Park et al. 2016
- Thalassobius mangrovi Chen et al. 2021
- Thalassobius maritimus Park et al. 2012
- Thalassobius mediterraneus Arahal et al. 2005
- Thalassobius taeanensis (Jin et al. 2011) Hördt et al. 2020
- Thalassobius vesicularis (Hameed et al. 2014) Zhang et al. 2023[15]
- Thalassococcus Lee et al. 2007
- Thiobacimonas Li et al. 2015，为Salipiger Martínez-Cánovas et al. 2004的异名
- 硫膨大杆菌属 Thioclava Sorokin et al. 2005
- 副球菌属 Thiosphaera Robertson & Kuenen 1984，为Paracoccus Davis 1969的异名
- Tranquillimonas Harwati et al. 2008
- Tritonibacter Klotz et al. 2018
- Tropicibacter Harwati et al. 2009
- Tropicimonas Harwati et al. 2009
- Vadicella Romanenko et al. 2011，为Celeribacter Ivanova et al. 2010的异名
- Vannielia Hördt et al. 2020
- Wagnerdoeblera Hördt et al. 2020，为Gemmobacter Rothe et al. 1988的异名
- Wenxinia Ying et al. 2007
- 方心芳菌属 Xinfangfangia Hu et al. 2018，本属以微生物学家，中国科学院院士方心芳的名字命名[16]
- Xuhuaishuia Wang et al. 2016，以Xu Huai-Shu教授的名字命名
- Xuhuaishuia manganoxidans Wang et al. 2016[17]
- 杨氏菌属 Yangia Dai et al. 2006，为Alloyangia Deshmukh and Oren 2023的异名
- Yoonia Wirth & Whitman 2018
- Youngimonas Hameed et al. 2014
參考文獻
[编辑]- ^ Rhodobacteraceae. GBIF. [2023-04-26]. （原始内容存档于2021-11-12）.
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- ^ Shao X, Meng D, Lei JX, Ding YY, Su JY, Wang YN, Li Y. Limimaricola litoreus sp. nov., isolated from intertidal sand of the Yellow Sea. Int J Syst Evol Microbiol 2023; 73:5772.
- ^ Zhang DF, He W, Shao Z, Ahmed I, Zhang Y, Li WJ, Zhao Z. Phylotaxonomic assessment based on four core gene sets and proposal of a genus definition among the families Paracoccaceae and Roseobacteraceae. Int J Syst Evol Microbiol 2023; 73:6156.
- ^ Park S, Won SM, Park JM, Jung YT, Yoon JH. Pontivivens insulae gen. nov., sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2015; 65:2896-2902.
- ^ Wang Z, Du RB, Sun QL, Sun YY, Zhang J, Tang YZ. Pontivivens ytuae sp. nov., isolated from deep sea sediment of the Mariana Trench. Int J Syst Evol Microbiol 2021; 71:4967.
- ^ Huang J, Wang J, Li G, Lai Q, Zhu X, Wang S, Liu X, Shao Z, Wang L. Pseudodonghicola flavimaris sp. nov. and Sedimentitalea xiamensis sp. nov., two novel species belonging to the family Roseobacteraceae. Int J Syst Evol Microbiol 2023; 73:6192.
- ^ Jeong YS, Kang W, Lee JY, Sung H, Kim HS, Han JE, Tak EJ, Lee SY, Lee JY, Kim PS, et al. Pseudorhodobacter turbinis sp. nov., isolated from the gut of the Korean turban shell, Turbo cornutus. Int J Syst Evol Microbiol 2019; 71:0.
- ^ Nedashkovskaya O, Otstavnykh N, Balabanova L, Bystritskaya E, Kim S-G, Zhukova N, Tekutyeva L, Isaeva M. Rhodoalgimonas zhirmunskyi gen. nov., sp. nov., a Marine Alphaproteobacterium Isolated from the Pacific Red Alga Ahnfeltia tobuchiensis: Phenotypic Characterization and Pan-Genome Analysis. Microorganisms 2023; 11:2463.
- ^ Jiang, Long-Qian,Zhang, Kun,Li, Gui-Ding,et al. Rubellimicrobium rubrum sp. nov., a novel bright reddish bacterium isolated from a lichen sample[J]. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY,2019,112(12):1739-1745.
- ^ Suzuki, T., Muroga, Y., Takahama, M., Shiba, T., Nishimura, Y. (1999). Rubrimonas cliftonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-containing bacterium isolated from a saline lake. Int.J.Syst.Bacteriol. 49 : 201-205.
- ^ Huang J, Wang J, Li G, Lai Q, Zhu X, Wang S, Liu X, Shao Z, Wang L. Pseudodonghicola flavimaris sp. nov. and Sedimentitalea xiamensis sp. nov., two novel species belonging to the family Roseobacteraceae. Int J Syst Evol Microbiol 2023; 73:6192.
- ^ Park CY, Chun SJ, Jin C, Le VV, Cui Y, Kim SY, Ahn CY, Oh HM. Tabrizicola algicola sp. nov. isolated from culture of microalga Ettlia sp. Int J Syst Evol Microbiol 2020; 70:6133-6141.
- ^ 14.0 14.1 Ma T, Xue H, Piao C, Liu C, Yang M, Bian D, Li Y. Reclassification of 11 Members of the Family Rhodobacteraceae at Genus and Species Levels and Proposal of Pseudogemmobacter hezensis sp. nov. Front Microbiol 2022; 13:849695.
- ^ Zhang DF, He W, Shao Z, Ahmed I, Zhang Y, Li WJ, Zhao Z. Phylotaxonomic assessment based on four core gene sets and proposal of a genus definition among the families Paracoccaceae and Roseobacteraceae. Int J Syst Evol Microbiol 2023; 73:6156.
- ^ Hu Q, Zhang L, Hang P, Zhou XY, Jia WB, Li SP, Jiang JD. Xinfangfangia soli gen. nov., sp. nov., isolated from a diuron-polluted soil. Int J Syst Evol Microbiol 2018; 68:2622-2626.
- ^ Wang L, Liu Y, Shi X, Wang Y, Zheng Y, Dai X, Zhang XH. Xuhuaishuia manganoxidans gen. nov., sp. nov., a manganese-oxidizing bacterium isolated from deep-sea sediments from the Pacific Polymetallic Nodule Province. Int J Syst Evol Microbiol 2016; 66:1521-1526.
- LPSN - List of Prokaryotic names with Standing in Nomenclature