根瘤菌科
根瘤菌科
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| 農桿菌正在入侵蘿蔔細胞 | |
科學分類 
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| 域： | 細菌域 Bacteria |
| 界： | 細菌界 Bacteria |
| 門： | 變形菌門 Pseudomonadota |
| 綱： | α-變形菌綱 Alphaproteobacteria |
| 目： | 根瘤菌目 Rhizobiales |
| 科： | 根瘤菌科 Rhizobiaceae Conn, 1938 |
| 模式屬 | |
| 根瘤菌屬 Rhizobium Frank, 1889
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| 屬[1] | |
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見正文 | |
根瘤菌科（學名：Rhizobiaceae）是屬於變形菌門中的一個科，包含許多種的根瘤菌（但不是全部）和植物的寄生生物，如：土壤桿菌屬。正如所有變形菌門中的生物，在根瘤菌科中也全屬於革蘭氏陰性菌。它們是好氧菌且細胞形狀通常為桿狀。其中有多種菌屬於固氮生物，它們有固氮的能力且與植物共生。[2]
下屬物種[編輯]
本屬包括以下物種：
- 土壤桿菌屬 Agrobacterium Conn 1942
- 阿倫斯氏菌屬 Ahrensia Uchino et al., 1999
- 異根瘤菌屬 Allorhizobium de Lajudie et al. 1998
- Allorhizobium ampelinum Kuzmanović et al. 2022
- Allorhizobium borbori (Zhang et al. 2011) Mousavi et al. 2016
- Allorhizobium oryzae (Peng et al. 2008) Mousavi et al. 2016
- Allorhizobium oryziradicis (Zhao et al. 2017) Lin et al. 2020
- Allorhizobium oryziradicis (Zhao et al. 2017) Hoerdt et al. 2020
- Allorhizobium paknamense (Kittiwongwattana and Thawai 2013) Mousavi et al. 2015
- Allorhizobium pseudoryzae (Zhang et al. 2011) Mousavi et al. 2016
- Allorhizobium sonneratiae Li et al. 2023[4]
- 太白山異根瘤菌 Allorhizobium taibaishanense (Yao et al. 2012) Hördt et al. 2020
- Allorhizobium terrae Lin et al. 2020
- Allorhizobium undicola de Lajudie et al. 1998
- Allorhizobium vitis (Ophel and Kerr 1990) Mousavi et al. 2016
- 氨基桿菌屬 Aminobacter Urakami et al., 1992
- 嗜碳桿菌屬 Carbophilus Meyer et al., 1994
- Ciceribacter Kathiravan et al. 2013
- Ciceribacter azotifigens Siddiqi et al. 2018
- Ciceribacter daejeonensis (Quan et al. 2005) Rahi et al. 2021
- Ciceribacter ferrooxidans Deng et al. 2020
- Ciceribacter lividus Kathiravan et al. 2013
- Ciceribacter naphthalenivorans (Kaiya et al. 2018) Rahi et al. 2021
- Ciceribacter selenitireducens (Hunter et al. 2008) Rahi et al. 2021
- Ciceribacter sichuanensis Zhang et al. 2024
- Ciceribacter thiooxidans Deng et al. 2017
- Crabtreella Xie and Yokota 2006, 為Shinella An et al. 2006的異名
- Endobacterium Menéndez et al. 2021
- Endobacterium cereale Menéndez et al. 2021，也拼作：Endobacterium cerealis
- Endobacterium yantingense (Chen et al. 2015) Kuzmanović et al. 2022
- 劍菌屬 Ensifer Casida 1982
- Ferirhizobium Romanenko et al. 2024
- Ferirhizobium litorale Romanenko et al. 2024[5]
- Ferranicluibacter Roca-Couso et al. 2023
- Ferranicluibacter rubi Roca-Couso et al. 2023[6]
- Gellertiella Tóth et al. 2017
- 地根瘤菌屬 Georhizobium Cao et al. 2020
- Hoeflea Peix et al. 2005
- Hoeflea alexandrii Palacios et al. 2006
- Hoeflea algicola Baek et al. 2023
- Hoeflea anabaenae Stevenson et al. 2011
- Hoeflea halophila Jung et al. 2013
- Hoeflea marina Peix et al. 2005
- Hoeflea olei Rahul et al. 2015
- Hoeflea phototrophica Biebl et al. 2006
- Hoeflea poritis Zhang et al. 2023[7]
- Hoeflea prorocentri Yang et al. 2018
- Hoeflea siderophila Sorokina et al. 2012
- Hoeflea suaedae Chung et al. 2013
- Hoeflea ulvae Baek et al. 2023
- Lentilitoribacter Park et al. 2013
- Lentilitoribacter donghaensis Park et al. 2013
- 韌皮部桿菌屬 Liberibacter Fagen et al. 2014
- Martelella Rivas et al. 2005
- 枝動菌屬 Mycoplana Gray and Thornton 1928
- Neopararhizobium Hoerdt et al. 2020
- Neopararhizobium haloflavum (Shen et al. 2018) Hoerdt et al. 2020
- 新根瘤菌屬 Neorhizobium Mousavi et al. 2015
- Onobrychidicola Ashrafi et al. 2023
- Onobrychidicola muellerharveyae Ashrafi et al. 2023[8]
- Paramartelella Ma et al. 2023
- Paramartelella alba (Li et al. 2021) Ma et al. 2023[9]
- Pararhizobium Mousavi et al. 2016
- Pararhizobium antarcticum Naqvi et al. 2017
- Pararhizobium arenae (Zhang et al. 2017) Kuzmanović et al. 2022[10]
- Pararhizobium capsulatum (Hirsch and Müller 1986) Mousavi et al. 2016
- Pararhizobium gei (Shi et al. 2016) De Lajudie and Young 2017
- Pararhizobium gei (Shi et al. 2016) Zhang et al. 2024
- Pararhizobium giardinii (Amarger et al. 1997) Mousavi et al. 2016
- Pararhizobium haloflavum Shen et al. 2018
- Pararhizobium helanshanense (Qin et al. 2012) Mousavi et al. 2015
- Pararhizobium herbae (Ren et al. 2011) Mousavi et al. 2016
- Pararhizobium mangrovi Li et al. 2021
- Pararhizobium polonicum Puławska et al. 2017
- Pararhizobium qamdonense Zhang et al. 2024
- Pararhizobium sphaerophysae (Xu et al. 2012) Mousavi et al. 2015
- Pseudorhizobium Kimes et al. 2017
- Pseudorhizobium banfieldiae Lassalle et al. 2021
- Pseudorhizobium endolithicum (Parag et al. 2014) Lassalle et al. 2021
- Pseudorhizobium flavum (Gu et al. 2014) Lassalle et al. 2021
- Pseudorhizobium halotolerans Lassalle et al. 2021
- Pseudorhizobium marinum (Liu et al. 2015) Lassalle et al. 2021
- Pseudorhizobium pelagicum Kimes et al. 2017
- Pseudorhizobium tarimense (Turdahon et al. 2013) Kuzmanović et al. 2022[11]
- 根瘤菌屬 Rhizobium Frank 1889
- 申氏菌屬 Shinella An et al. 2006
- Shinella albus Li et al. 2016
- Shinella curvata Subhash and Lee 2016
- 大田申氏菌 Shinella daejeonensis Lee et al. 2011
- Shinella fusca Vaz-Moreira et al. 2010
- Shinella granuli An et al. 2006
- Shinella kummerowiae Lin et al. 2008
- Shinella lacus Gong et al. 2022
- 穀物申氏菌 Shinella oryzae Gao et al. 2022
- Shinella pollutisoli Mu et al. 2018
- 沉積物申氏菌 Shinella sedimenti Chen et al. 2023[12]
- Shinella sumterensis Arya et al. 2022
- Shinella yambaruensis Matsui et al. 2009
- Shinella zoogloeoides An et al. 2006
- 中華根瘤菌屬 Sinorhizobium Chen et al. 1988，為Ensifer Casida 1982的異名
參考[編輯]
- ^ List of Prokaryotic names with Standing in Nomenclature 互聯網檔案館的存檔，存檔日期2010-05-04.
- ^ Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T. (eds.) (2005). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. New York, New York: Springer. ISBN 978-0-387-24145-6.
- ^ Ahrens, R. (1968). Taxonomische Untersuchungen an sternbildenden Agrobacterium-Arten aus der westlichen Ostsee. Kiel.Meeresforsch. 24 : 147-173 .
- ^ Li F, Yu L, Su XY, Wang QZ, Huang SS, Qin XL, Tuo L. Allorhizobium sonneratiae sp. nov., an endophytic bacterium isolated from the root of Sonneratia apetala. Int J Syst Evol Microbiol 2023; 73:5641.
- ^ Romanenko L, Otstavnykh N, Tanaka N, Kurilenko V, Svetashev V, Tekutyeva L, Mikhailov V, Isaeva M. Characterization and Genomic Analysis of Fererhizobium litorale gen. nov., sp. nov., Isolated from the Sandy Sediments of the Sea of Japan Seashore. Microorganisms 2023; 11:2385.
- ^ Roca-Couso R, Flores-Felix JD, Igual JM, Garcia-Fraile P, Velazquez E, Rivas R. Ferranicluibacter rubi gen. nov., sp. nov., a new member of family Rhizobiaceae isolated from stems of elmleaf blackberry (Rubus ulmifolius Schott) in Northwest Spain. Int J Syst Evol Microbiol 2023; 73:5789.
- ^ Zhang G, Zhang Z, Sajid S, Wei Q, Cai L. Hoeflea poritis sp. nov., isolated from a bleached scleractinian coral Porites lutea. Int J Syst Evol Microbiol 2023; 73:6097.
- ^ Ashrafi S, Kuzmanovic N, Patz S, Lohwasser U, Bunk B, Sproer C, Lorenz M, Elhady A, Fruhling A, Neumann-Schaal M, et al. Two New Rhizobiales Species Isolated from Root Nodules of Common Sainfoin (Onobrychis viciifolia) Show Different Plant Colonization Strategies. Microbiol Spectr 2022; 10:e0109922.
- ^ Ma T, Xue H, Piao C, Jiang N, Li Y. Phylogenomic reappraisal of the family Rhizobiaceae at the genus and species levels, including the description of Ectorhizobium quercum gen. nov., sp. nov. Front Microbiol 2023; 14:1207256.
- ^ Kuzmanovic N, Fagorzi C, Mengoni A, Lassalle F, diCenzo GC. Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation. Int J Syst Evol Microbiol 2022; 72:5243.
- ^ Kuzmanovic N, Fagorzi C, Mengoni A, Lassalle F, diCenzo GC. Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation. Int J Syst Evol Microbiol 2022; 72:5243.
- ^ Chen G, He M, Li KJ, Zheng KW, Tang XX, Debnath SC, Wang PM, Guo Z, Hong Y, Zheng DQ. Shinella sedimenti sp. nov., isolated from sediment of Zhairuo Island located in the East China Sea. Int J Syst Evol Microbiol 2023; 73:6000.
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